species:   Clros
pid:       PID1835
parent:    cro-mir-1
paralog:   
locus:     CADEHS020000002.2:2259339-2259416
matures:   ['UAGAAUUCGGGGUAGAAU', '']
srr:       ERR5950930
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram CADEHS020000002.2:2259339-2259416

6816 out of bounds
615 alignments
532 proper strand
524 stranded perfect matches

****************                                          ********************
UACCCCGAAUUCUAUGGCGGCAAUGUGAAUGUUAGGAUCGCGGCAGGUUAGUUGCCGCCAUAGAAUUCGGGGUAGAAU
((((((((((((((((((((((((.....((((........)))).....))))))))))))))))))))))))....
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=457 c
------------------------------------------------------------------------------ l=0 a=0 c*
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=457 ma
------------------------------------------------------------------------------ l=0 a=0 ma*

----CCGAAUUCUAU--------------------------------------------------------------- l=11 a=2 
----CCGAAUUCUAUG-------------------------------------------------------------- l=12 a=3 
------------------------------------------------------------UAGAAUUCGGGGU----- l=13 a=1 
------------------------------------------------------------UAGAAUUCGGGGUA---- l=14 a=32 
------------------------------------------------------------UAGAAUUCGGGGUAG--- l=15 a=5 
------------------------------------------------------------UAGAAUUCGGGGUAGA-- l=16 a=10 
------------------------------------------------------------UAGAAUUCGGGGUAGAA- l=17 a=12 
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=457 (c,ma)
------------------------------------------------------------UAGAAUUCGGGGUAGAAa l=18 a=2 
------------------------------------------------------------UAGAAUUCGGGGUAGAAg l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGcAGAAU l=18 a=1 
------------------------------------------------------------aAGAAUUCGGGGUAGAAU l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAgU l=18 a=1 
------------------------------------------------------------cAGAAUUCGGGGUAGAAU l=18 a=1 
------------------------------------------------------------UgGAAUUCGGGGUAGAAU l=18 a=1 
--------------------------------------------------------------GAAUUCGGGGUAGAA- l=15 a=1 
----------------------------------------------------------------AUUCGGGGUAGAAU l=14 a=1 

mb-00110
ax-0011100
ku-11
ss-101011111010
fn-111
